diff --git a/Jenkinsfile b/Jenkinsfile
index 3d5ea101..ba2f04bd 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -25,6 +25,8 @@ pipeline {
                     sh './ci-scripts/test-firmware-program.sh'
                 }
                 sh './ci-scripts/test-firmware-flash.sh'
+                sh './ci-scripts/test-clkin.sh'
+                sh './ci-scripts/test-clkout.sh'
             }
         }
     }
diff --git a/ci-scripts/test-clkin.sh b/ci-scripts/test-clkin.sh
new file mode 100755
index 00000000..5fba6aad
--- /dev/null
+++ b/ci-scripts/test-clkin.sh
@@ -0,0 +1,57 @@
+#!/bin/bash
+
+# Configuration for EUT and TESTER devices
+# FIXME: move to Dockerfile or somewhere
+EUT=RunningFromRAM
+TESTER=0000000000000000325866e629a25623
+EUT_HUB=D9D1
+EUT_PORT=2
+TESTER_HUB=624C
+TESTER_PORT=2
+
+COMMAND=host/build/hackrf-tools/src/hackrf_clock
+
+# Power on USB ports for both EUT and TESTER
+usbhub --disable-i2c --hub ${EUT_HUB} power state --port ${EUT_PORT} --on
+usbhub --disable-i2c --hub ${TESTER_HUB} power state --port ${TESTER_PORT} --on
+sleep 1
+
+echo "Activating CLKOUT"
+${COMMAND} -d ${TESTER} -o1 >/tmp/stdout.$$ 2>/tmp/stderr.$$
+if [ "$?" != "0" ]
+then
+	cat /tmp/stdout.$$
+	cat /tmp/stderr.$$
+	echo "hackrf_clock command failed."
+	exit $EXIT_CODE
+fi
+
+${COMMAND} -d ${EUT} -i >/tmp/stdout.$$ 2>/tmp/stderr.$$
+
+grep -q ": clock signal detected" /tmp/stdout.$$
+if [ "$?" != "0" ]
+then
+	cat /tmp/stdout.$$
+	cat /tmp/stderr.$$
+	exit 2
+fi
+
+echo "Deactivating CLKOUT"
+${COMMAND} -d ${TESTER} -o0 >/tmp/stdout.$$ 2>/tmp/stderr.$$
+if [ "$?" != "0" ]
+then
+	cat /tmp/stdout.$$
+	cat /tmp/stderr.$$
+	echo "hackrf_clock command failed."
+	exit $EXIT_CODE
+fi
+
+${COMMAND} -d ${EUT} -i >/tmp/stdout.$$ 2>/tmp/stderr.$$
+
+grep -q ": no clock signal detected" /tmp/stdout.$$
+if [ "$?" != "0" ]
+then
+	cat /tmp/stdout.$$
+	cat /tmp/stderr.$$
+	exit 3
+fi
diff --git a/ci-scripts/test-clkout.sh b/ci-scripts/test-clkout.sh
new file mode 100755
index 00000000..6f487998
--- /dev/null
+++ b/ci-scripts/test-clkout.sh
@@ -0,0 +1,57 @@
+#!/bin/bash
+
+# Configuration for EUT and TESTER devices
+# FIXME: move to Dockerfile or somewhere
+EUT=RunningFromRAM
+TESTER=0000000000000000325866e629a25623
+EUT_HUB=D9D1
+EUT_PORT=2
+TESTER_HUB=624C
+TESTER_PORT=2
+
+COMMAND=host/build/hackrf-tools/src/hackrf_clock
+
+# Power on USB ports for both EUT and TESTER
+usbhub --disable-i2c --hub ${EUT_HUB} power state --port ${EUT_PORT} --on
+usbhub --disable-i2c --hub ${TESTER_HUB} power state --port ${TESTER_PORT} --on
+sleep 1
+
+echo "Activating CLKOUT"
+${COMMAND} -d ${EUT} -o1 >/tmp/stdout.$$ 2>/tmp/stderr.$$
+if [ "$?" != "0" ]
+then
+	cat /tmp/stdout.$$
+	cat /tmp/stderr.$$
+	echo "hackrf_clock command failed."
+	exit $EXIT_CODE
+fi
+
+${COMMAND} -d ${TESTER} -i >/tmp/stdout.$$ 2>/tmp/stderr.$$
+
+grep -q ": clock signal detected" /tmp/stdout.$$
+if [ "$?" != "0" ]
+then
+	cat /tmp/stdout.$$
+	cat /tmp/stderr.$$
+	exit 2
+fi
+
+echo "Deactivating CLKOUT"
+${COMMAND} -d ${EUT} -o0 >/tmp/stdout.$$ 2>/tmp/stderr.$$
+if [ "$?" != "0" ]
+then
+	cat /tmp/stdout.$$
+	cat /tmp/stderr.$$
+	echo "hackrf_clock command failed."
+	exit $EXIT_CODE
+fi
+
+${COMMAND} -d ${TESTER} -i >/tmp/stdout.$$ 2>/tmp/stderr.$$
+
+grep -q ": no clock signal detected" /tmp/stdout.$$
+if [ "$?" != "0" ]
+then
+	cat /tmp/stdout.$$
+	cat /tmp/stderr.$$
+	exit 3
+fi